Program

NIPS 2004 Computational Biology Workshop


		7:30-10:40			Saturday morning session


		7:30am			Welcome and overview The organizers

		7:40am			Dynamic Re-wiring of Protein Interaction: The Case of Transactivation Gabriele Scheler

		8:05am			On the Reconstruction of Interaction Networks with Applications to Transcriptional Regulation Adam Margolin, Ilya Nemenman, Chris Wiggins, Gustavo Stolovitzky & Andrea Califano

		8:30am			Protein Function Prediction using Bayesian Statistics Barbara Engelhardt, Steven Brenner & Michael Jordan

		8:55am			Break + Posters
		9:05am			Probabilistic Models for Identifying Regulation Networks: From Qualitative to Quantitative Models Nir Friedman

		9:45am			An Algorithm for Multipoint Linkage Analysis Cornelis Albers, Tom Heskes & Hilbert Kappen

		10:10am			Kernel Methods for Predicting Protein-Protein Interactions Asa Ben-Hur & William S. Noble

		10:25am			Predicting and Analyzing Gene Regulatory Response Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chris Wiggins, Yoav Freund & Christina Leslie

		10:40-11:30			Posters
					Supervised Learning for Decoding Beads in a Randomly-assembled Optical Nose Bahram G. Kermani , Igor Fomenko , Theo Kotseroglou, Behrouz Forood, Lori Clark, David Barker, Michal Lebl
					Dimension Reduction of Microarray Data with Independent Component Analysis Rafal Kustra & Han Liu


		4:00-7:05			Saturday afternoon session


		4:00pm			Cell Programming - The Case of a Functional Synapse Michal Linial

		4:35pm			Protein Ranking: Global Structure in the Protein Network Jason Weston, Andre Elisseeff, Dengyong Zhou, Christina Leslie & William S. Noble

		5:00pm			Predicting Protein Levels from Tandem Mass Spectrometry Data Anthony Bonner & Han Liu

		5:15pm			Learning Kernel Convex Combinations for Biological Sequence Classification Sören Sonnenburg, Gunnar Rätsch & Christin Schäfer

		5:30pm			Break
		5:45pm			Graph Kernels for Molecular Classification and Prediction of Mutagenicity, Toxicity, and Anti-Cancer Activity Pierre Baldi

		6:10pm			Predicting Protein-Peptide Binding Affinity using Distance Learning Algorithms Tomer Hertz & Chen Yanover

		6:35pm			Kernel Extrapolations for Enzyme Classification S.V.N. Vishwanathan, Omri Guttman, Karsten Borgwardt and Alex Smola

		6:50pm			Automatic Sequence Identificaion of Protein Domain Families Elon Portugaly, Nathan Linial & Michal Linial

		7:05pm			Closing remarks and discussion

Page last updated on November 10, 2004