Workshop Schedule

7:30am opening remarks
7:35am Invited talk: Genetic variation and regulatory networks: mechanisms and complexity , Dana Pe'er
8:15am Prediction of tissue-specific cis-regulatory modules using Bayesian networks and probability trees, X. Chen and M. Blanchette
8:30am Metric learning pairwise kernel for graph inference, J.-P. Vert, J. Qiu and W. S. Noble
8:45am Reverse engineering temporally rewiring gene networks, F. Guo, W. Fu, Y. Shi and E. P. Xing
9:10am Coffee break
9:25am Compact belief propagation: using symmetry properties in relational graphical models for efficient inference, A. Jaimovitch, O. Meshi and N. Friedman
9:50am Ab-initio gene finding using machine learning, G. Schweikert, A. Zien, G. Zeller, C.S. Ong, F. de Bona, S. Sonnenburg, P. Phillips, G. Rätsch
10:05am The processing and analysis of in situ gene expression images of the mouse brain, M. N.Jagalur, C. Pal, E. L. Miller, R. T. Zoeller and D. Kulp

3:45pm Invited talk: Analysis of heterogeneous microarray-based data, Terrence Furey
4:25pm Inferring active signaling pathways by boosting the phosphorylation network , S. Lianoglou, A. Kundaje and C. Leslie
4:40pm Graph boosting for molecular QSAR analysis, H. Saigo, T. Kadowaki, T. Kudo and K. Tsuda
4:55pm Stochastic integrative modeling of transcription regulation, N. Novershtern, A. Regev and N. Friedman
5:20pm Coffee break
5:30pm Improved prediction of HIV resistance in-vitro by biochemically-driven models, H. Neuvirth, M. Rosen-Zvi, N. Srebro, E. Aharoni, M. Zazzi and N. Tishby
5:55pm Time-series alignment by non-negative multiple generalized CCA for quantitative proteomics, B. Fischer, V. Roth and J. M. Buhmann
6:10pm Reconstructing the phylogeny of mobile elements, S. O'Rourke, N. Zaitlen, N. Jojic and E. Eskin
6:25pm Identifying the effects of human immune presure on the evolution of HIV, Jonathan Carlson, Carl Kadie and D. Heckerman
6:50pm Closing